SRX101696
GSM818948: H3K27me3 ChIP-Seq in Sox3-transfected C2C12 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12 muscle progenitor cells
cell type
Sox3-transfected C2C12 cells
differentiation specificity
None
chip antibody
H3K27me3 (Millipore)

Sequenced DNA Library

library_name
GSM818948: H3K27me3 ChIP-Seq in Sox3-transfected C2C12 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19314833
Reads aligned (%)
84.5
Duplicates removed (%)
32.7
Number of peaks
24539 (qval < 1E-05)

mm9

Number of total reads
19314833
Reads aligned (%)
84.5
Duplicates removed (%)
32.7
Number of peaks
24600 (qval < 1E-05)

Base call quality data from DBCLS SRA