SRX101691
GSM818943: Sox11 ChIP-Seq in early formed neurons, biol repl 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Sox11

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neurons
cell type
ES-derived neurons
differentiation specificity
11 days in differentiation conditions with retinoic acid
chip antibody
Sox11 (M. Wegner)

Sequenced DNA Library

library_name
GSM818943: Sox11 ChIP-Seq in early formed neurons, biol repl 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3264474
Reads aligned (%)
90.2
Duplicates removed (%)
7.5
Number of peaks
205 (qval < 1E-05)

mm9

Number of total reads
3264474
Reads aligned (%)
90.0
Duplicates removed (%)
8.1
Number of peaks
201 (qval < 1E-05)

Base call quality data from DBCLS SRA