SRX101684
GSM818936: Sox3 ChIP-Seq in neural progenitor cells, biol repl 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Sox3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neural progenitor cells
cell type
ES-derived neural progenitor cells
differentiation specificity
4 days in differentiation conditions with retinoic acid
chip antibody
Sox3 (T. Edlund)

Sequenced DNA Library

library_name
GSM818936: Sox3 ChIP-Seq in neural progenitor cells, biol repl 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
4669028
Reads aligned (%)
89.2
Duplicates removed (%)
14.2
Number of peaks
4478 (qval < 1E-05)

mm9

Number of total reads
4669028
Reads aligned (%)
89.0
Duplicates removed (%)
14.6
Number of peaks
4481 (qval < 1E-05)

Base call quality data from DBCLS SRA