SRX101683
GSM820618: Flavo PolII 8W

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12 myoblasts
strain
C3H
cell line
C2C12 myoblasts
agent
flavopiridol
chip antibody
PolII 8WG16
chip antibody vendor
Covance

Sequenced DNA Library

library_name
GSM820618: Flavo_PolII_8W
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27253057
Reads aligned (%)
75.9
Duplicates removed (%)
14.9
Number of peaks
11333 (qval < 1E-05)

mm9

Number of total reads
27253057
Reads aligned (%)
75.8
Duplicates removed (%)
15.0
Number of peaks
11372 (qval < 1E-05)

Base call quality data from DBCLS SRA