SRX1013962
GSM1670867: DOX EGF K27 rep1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cell line
cell type
Hela cell line
treatment
doxycyclin EGF
antibody
IP with rabbit anti-H3K27ac (Abcam ab4729, Lot: GR183919-2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq: NEBNext ChIP-seq library kit (new England Biolabs)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
46336420
Reads aligned (%)
95.4
Duplicates removed (%)
14.0
Number of peaks
27854 (qval < 1E-05)

hg19

Number of total reads
46336420
Reads aligned (%)
94.9
Duplicates removed (%)
14.8
Number of peaks
27643 (qval < 1E-05)

Base call quality data from DBCLS SRA