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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: RKO
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX101304
GSM818283: input DNA
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Digestive tract
Cell type
RKO
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
RKO_input DNA
cell line
RKO
cell type
human colon carcinoma
growth conditions
untreated cells, normal growth conditions
Sequenced DNA Library
library_name
GSM818283: input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
39429488
Reads aligned (%)
97.8
Duplicates removed (%)
2.1
Number of peaks
1201 (qval < 1E-05)
hg19
Number of total reads
39429488
Reads aligned (%)
97.0
Duplicates removed (%)
3.1
Number of peaks
1309 (qval < 1E-05)
Base call quality data from
DBCLS SRA