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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: hESC derived neural cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX101237
Reference Epigenome: ChIP-Seq Analysis of H3K36me3 in Neural Progenitor Cells
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA
Attributes by original data submitter
Sample
MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
James Thomson Laboratory
BIOMATERIAL_TYPE
Cell Line
LINE
H1
LINEAGE
Embryonic Stem Cell
DIFFERENTIATION_STAGE
Embryonic stem cell differentiated into neural progenitor cells
DIFFERENTIATION_METHOD
Publication in progress
PASSAGE
Between 20 and 30
MEDIUM
Publication in progress
SEX
male
BATCH
NPC-4
sample_term_id
CL_0000047
Sequenced DNA Library
library_name
AK202
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
145107523
Reads aligned (%)
89.9
Duplicates removed (%)
6.5
Number of peaks
3341 (qval < 1E-05)
hg19
Number of total reads
145107523
Reads aligned (%)
89.1
Duplicates removed (%)
8.0
Number of peaks
2381 (qval < 1E-05)
Base call quality data from
DBCLS SRA