SRX101129
GSM817346: Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Hormone refractory prostate cancer cells
cells
VCaP
treatment
Pooled
chip antibody
none

Sequenced DNA Library

library_name
GSM817346: Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48581431
Reads aligned (%)
87.7
Duplicates removed (%)
20.4
Number of peaks
945 (qval < 1E-05)

hg19

Number of total reads
48581431
Reads aligned (%)
86.8
Duplicates removed (%)
21.4
Number of peaks
1071 (qval < 1E-05)

Base call quality data from DBCLS SRA