Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
Fetal heart
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Heart
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-23744
DONOR_AGE
day 91
DONOR_HEALTH_STATUS
NA
DONOR_SEX
female
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0000948

Sequenced DNA Library

library_name
DS19431
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
53258595
Reads aligned (%)
80.7
Duplicates removed (%)
19.2
Number of peaks
99217 (qval < 1E-05)

hg19

Number of total reads
53258595
Reads aligned (%)
80.3
Duplicates removed (%)
20.1
Number of peaks
99122 (qval < 1E-05)

Base call quality data from DBCLS SRA