Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Kidney

Cell type

Kidney Cortex

MeSH Description

The outer zone of the KIDNEY, beneath the capsule, consisting of KIDNEY GLOMERULUS; KIDNEY TUBULES, DISTAL; and KIDNEY TUBULES, PROXIMAL.

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

University of Washington, Congenital Defects Lab. Ian Glass

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Fetal Renal Cortex, Left

TISSUE_DEPOT

UW

COLLECTION_METHOD

fetal

DONOR_ID

H-24232

DONOR_AGE

day 105

DONOR_HEALTH_STATUS

NA

DONOR_SEX

male

DONOR_ETHNICITY

NA

sample_term_id

UBERON_0001225

Sequenced DNA Library

library_name

DS19257

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

46337720

Reads aligned (%)

84.0

Duplicates removed (%)

11.5

Number of peaks

84651 (qval < 1E-05)

hg19

Number of total reads

46337720

Reads aligned (%)

83.7

Duplicates removed (%)

12.2

Number of peaks

84185 (qval < 1E-05)