Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Liver

Cell type

Hepatocytes

MeSH Description

The main structural component of the LIVER. They are specialized EPITHELIAL CELLS that are organized into interconnected plates called lobules.

Sample

source_name

Hepatocytes

biomaterial_provider

zen-bio

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell description

primary hepatocytes, liver perfused by enzymes to generate single cell suspension

controlid

generic_female,generic_male

labversion

aligned to female and input was generic_female (should have been male),fseq v 1.84, iff_generic_female (should have been male),p-value cutoff: 0.05, input was generic_female (should have been male),baseAlignCounts.pl v 1, input was generic_female (should have been male)

replicate

1,2

cell description

Primary Human Hepatocytes, liver perfused by enzymes to generate single cell suspension

cell karyotype

normal

cell lineage

endoderm

cell sex

B

controlid

generic_male

labversion

align_on_cluster_bwa.pl v 1, input was generic_female (should have been male)

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM816663: Duke_DnaseSeq_Hepatocytes

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

153019758

Reads aligned (%)

55.3

Duplicates removed (%)

15.6

Number of peaks

4058 (qval < 1E-05)

hg19

Number of total reads

153019758

Reads aligned (%)

55.2

Duplicates removed (%)

16.7

Number of peaks

3477 (qval < 1E-05)