Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

GM18507

Tissue

blood

Lineage

mesoderm

Description

lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM18507

biomaterial_provider

Coriell

datatype

DnaseSeq

datatype description

DNaseI HS Sequencing

cell description

lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

controlid

generic_male

labversion

baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05,1% ENCODE array platform validation tests

replicate

1,3,2

cell description

Lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, Treatment: Epstein-Barr Virus transformed

cell karyotype

unknown

cell lineage

mesoderm

cell sex

M

treatment

None

treatment description

No special treatment or protocol applies

controlid

generic_male

labversion

align_on_cluster_bwa.pl v 1

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM816653: Duke_DnaseSeq_GM18507

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

59493698

Reads aligned (%)

97.9

Duplicates removed (%)

11.4

Number of peaks

0 (qval < 1E-05)

hg19

Number of total reads

59493698

Reads aligned (%)

97.4

Duplicates removed (%)

11.8

Number of peaks

21032 (qval < 1E-05)