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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H2A.XS139ph
wikigenes
PDBj
CellType: mIMCD-3
ATCC
MeSH
RIKEN BRC
SRX100822
GSM813781: UV P-H2AX ChIPSeq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H2A.XS139ph
Cell type
Cell type Class
Kidney
Cell type
mIMCD-3
NA
NA
Attributes by original data submitter
Sample
source_name
mIMCD3
cell type
mIMCD3
antibody
anti-gammaH2AX
vendor
No.05-636, Millipore
treatment
15 J/m2 of UV light in a Stratalinker UV Crosslinker
Sequenced DNA Library
library_name
GSM813781: UV_P-H2AX_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
18215030
Reads aligned (%)
97.7
Duplicates removed (%)
14.0
Number of peaks
369 (qval < 1E-05)
mm9
Number of total reads
18215030
Reads aligned (%)
97.5
Duplicates removed (%)
14.0
Number of peaks
446 (qval < 1E-05)
Base call quality data from
DBCLS SRA