SRX100820
GSM813779: Control P-H2AX ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.XS139ph

Cell type

Cell type Class
Kidney
Cell type
mIMCD-3
NA
NA

Attributes by original data submitter

Sample

source_name
mIMCD3
cell type
mIMCD3
antibody
anti-gammaH2AX
vendor
No.05-636, Millipore
treatment
osmolality at 300-320 mosmol/kg

Sequenced DNA Library

library_name
GSM813779: Control_P-H2AX_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18079539
Reads aligned (%)
97.4
Duplicates removed (%)
14.1
Number of peaks
362 (qval < 1E-05)

mm9

Number of total reads
18079539
Reads aligned (%)
97.2
Duplicates removed (%)
14.1
Number of peaks
512 (qval < 1E-05)

Base call quality data from DBCLS SRA