Antigen

Antigen Class

TFs and others

Antigen

TAF1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

antibody antibodydescription

Mouse monoclonal (p250). Antibody Target: TAF1

antibody targetdescription

TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-735

protocol description

one 15-cycle round of PCR (Myers)

controlid

SL516

labexpid

SL1062,SL805

labversion

SL588

replicate

1,2

antibody targetdescription

TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-735

treatment

None

treatment description

No special treatment or protocol applies

protocol

PCR1x

protocol description

1-cycle of PCR (Myers)

controlid

SL516

labexpid

SL805

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803537: HudsonAlpha_ChipSeq_GM12878_TAF1_PCR1x

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

52842547

Reads aligned (%)

81.6

Duplicates removed (%)

12.1

Number of peaks

15180 (qval < 1E-05)

hg19

Number of total reads

52842547

Reads aligned (%)

79.9

Duplicates removed (%)

12.6

Number of peaks

15736 (qval < 1E-05)