Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF3

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
hepatocellular carcinoma
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of ATF3 of human origin. Antibody Target: ATF3
antibody targetdescription
Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription.
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-188
controlid
SL1400,SL1781
labexpid
SL1787,SL2386
replicate
1,2
softwareversion
MACS
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of ATF3 of human origin.
antibody targetdescription
Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-188
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL1781
labexpid
SL2386
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803503: HudsonAlpha_ChipSeq_HepG2_ATF3_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
62141215
Reads aligned (%)
77.7
Duplicates removed (%)
14.1
Number of peaks
4524 (qval < 1E-05)

hg38

Number of total reads
62141215
Reads aligned (%)
79.2
Duplicates removed (%)
13.0
Number of peaks
4436 (qval < 1E-05)

Base call quality data from DBCLS SRA