Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
hepatocellular carcinoma
antibody antibodydescription
Rabbit Polyclonal. Antibody Target: P300
antibody targetdescription
EP300(c-20)
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-585
controlid
SL1781
labexpid
SL3644,SL3154
replicate
1,2
softwareversion
MACS
antibody antibodydescription
Rabbit Polyclonal
antibody targetdescription
EP300(c-20)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-585
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL1781
labexpid
SL3154
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803499: HudsonAlpha_ChipSeq_HepG2_p300_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
64327174
Reads aligned (%)
90.6
Duplicates removed (%)
15.2
Number of peaks
39633 (qval < 1E-05)

hg19

Number of total reads
64327174
Reads aligned (%)
90.1
Duplicates removed (%)
16.1
Number of peaks
39630 (qval < 1E-05)

Base call quality data from DBCLS SRA