Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12891

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM12891

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

protocol description

one 15-cycle round of PCR (Myers)

controlid

SL817

labexpid

SL817

labversion

SL817

cell karyotype

unknown

cell lineage

mesoderm

cell sex

M

antibody

RevXlinkChromatin

treatment

None

treatment description

No special treatment or protocol applies

protocol

PCR1x

protocol description

1-cycle of PCR (Myers)

controlid

SL817

labexpid

SL817

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803481: HudsonAlpha_ChipSeq_GM12891_RevXlinkChromatin_PCR1x

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

28271971

Reads aligned (%)

77.3

Duplicates removed (%)

4.4

Number of peaks

607 (qval < 1E-05)

hg19

Number of total reads

28271971

Reads aligned (%)

74.1

Duplicates removed (%)

3.4

Number of peaks

960 (qval < 1E-05)