ChIP-Atlas: SRX100524

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Uterus
Cell type: HeLa
Primary Tissue: Cervix
Tissue Diagnosis: Adenocarcinoma

Attributes by original data submitter

Sample

source_name: HeLa-S3
biomaterial_provider: ATCC
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell lineage: ectoderm
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL592
labexpid: SL592
cell description: cervical carcinoma
cell karyotype: cancer
cell sex: F
antibody: RevXlinkChromatin
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL592
labexpid: SL592
replicate: 1
replicate description: tier 1

Sequenced DNA Library

library_name: GSM803479: HudsonAlpha_ChipSeq_HeLa-S3_RevXlinkChromatin_PCR1x
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 50638576
Reads aligned (%): 66.7
Duplicates removed (%): 3.0
Number of peaks: 1031 (qval < 1E-05)

hg19

Number of total reads: 50638576
Reads aligned (%): 66.0
Duplicates removed (%): 4.3
Number of peaks: 1095 (qval < 1E-05)

Base call quality data from DBCLS SRA