Antigen

Antigen Class

TFs and others

Antigen

SRF

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

antibody antibodydescription

Rabbit polyclonal. Antibody Target: SRF

antibody targetdescription

Serum response transcription factor

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-335

controlid

SL1613

labexpid

SL3578,SL3827

replicate

1,2

softwareversion

MACS

antibody antibodydescription

Rabbit polyclonal

antibody targetdescription

Serum response transcription factor

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-335

treatment

None

treatment description

No special treatment or protocol applies

protocol

v041610.1

protocol description

2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

controlid

SL1613

labexpid

SL3578

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803477: HudsonAlpha_ChipSeq_GM12878_SRF_v041610.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

63961294

Reads aligned (%)

77.5

Duplicates removed (%)

36.5

Number of peaks

15102 (qval < 1E-05)

hg19

Number of total reads

63961294

Reads aligned (%)

76.2

Duplicates removed (%)

37.1

Number of peaks

15857 (qval < 1E-05)