SRX100515
GSM803470: HudsonAlpha ChipSeq K562 YY1 v041610.2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
YY1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal. Antibody Target: YY1
antibody targetdescription
YIN YANG 1 transcription factor belongs to the GLI-Kruppel class of zinc finger proteins.
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-1703
controlid
SL1396,SL1397
labexpid
SL2946,SL3071
replicate
1,2
softwareversion
MACS
antibody
YY1
antibody antibodydescription
Rabbit polyclonal
antibody targetdescription
YIN YANG 1 transcription factor belongs to the GLI-Kruppel class of zinc finger proteins.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-1703
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.2
protocol description
2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid
SL1396
labexpid
SL2946
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803470: HudsonAlpha_ChipSeq_K562_YY1_v041610.2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
60596454
Reads aligned (%)
79.1
Duplicates removed (%)
24.7
Number of peaks
45582 (qval < 1E-05)

hg19

Number of total reads
60596454
Reads aligned (%)
78.7
Duplicates removed (%)
25.5
Number of peaks
45587 (qval < 1E-05)

Base call quality data from DBCLS SRA