SRX100492
GSM803447: HudsonAlpha ChipSeq K562 Rad21 v041610.2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal. Antibody Target: RAD21
antibody targetdescription
Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14
antibody vendorname
abcam
antibody vendorid
ab992
controlid
SL1396,SL1397
labexpid
SL2947,SL3072
replicate
1,2
softwareversion
MACS
antibody
Rad21
antibody antibodydescription
Rabbit polyclonal
antibody targetdescription
Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14
antibody vendorname
Abcam
antibody vendorid
ab992
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.2
protocol description
2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid
SL1396
labexpid
SL2947
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803447: HudsonAlpha_ChipSeq_K562_Rad21_v041610.2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47486632
Reads aligned (%)
64.2
Duplicates removed (%)
26.6
Number of peaks
50973 (qval < 1E-05)

hg19

Number of total reads
47486632
Reads aligned (%)
63.8
Duplicates removed (%)
27.1
Number of peaks
52516 (qval < 1E-05)

Base call quality data from DBCLS SRA