Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
YY1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1
antibody targetdescription
YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-281
controlid
SL2455,SL2455
labexpid
SL2203,SL2944
softwareversion
MACS
cell sex
F
antibody
YY1_(SC-281)
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1
antibody targetdescription
YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-281
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL2455,SL2455
labexpid
SL2203,SL2944
replicate
1,2
softwareversion
MACS

Sequenced DNA Library

library_name
GSM803446: HudsonAlpha_ChipSeq_K562_YY1_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
70922322
Reads aligned (%)
26.2
Duplicates removed (%)
61.1
Number of peaks
25759 (qval < 1E-05)

hg38

Number of total reads
70922322
Reads aligned (%)
26.7
Duplicates removed (%)
61.0
Number of peaks
24722 (qval < 1E-05)

Base call quality data from DBCLS SRA