Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TAF1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Mouse monoclonal (p250). Antibody Target: TAF1
antibody targetdescription
TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-735
controlid
SL2455
labexpid
SL2941,SL2942
replicate
1,2
softwareversion
MACS
antibody
TAF1
antibody antibodydescription
Mouse monoclonal (p250)
antibody targetdescription
TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-735
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL2455
labexpid
SL2941
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803431: HudsonAlpha_ChipSeq_K562_TAF1_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
28461788
Reads aligned (%)
50.2
Duplicates removed (%)
40.5
Number of peaks
18827 (qval < 1E-05)

hg38

Number of total reads
28461788
Reads aligned (%)
50.6
Duplicates removed (%)
40.2
Number of peaks
18849 (qval < 1E-05)

Base call quality data from DBCLS SRA