Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

controlid

SL3979

labexpid

SL3979

cell organism

human

cell description

lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

antibody

RevXlinkChromatin

treatment

None

treatment description

No special treatment or protocol applies

protocol

v041610.2

protocol description

2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

controlid

SL3979

labexpid

SL3979

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803413: HudsonAlpha_ChipSeq_GM12878_RevXlinkChromatin_v041610.2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

27872370

Reads aligned (%)

95.1

Duplicates removed (%)

3.7

Number of peaks

396 (qval < 1E-05)

hg19

Number of total reads

27872370

Reads aligned (%)

93.5

Duplicates removed (%)

3.9

Number of peaks

645 (qval < 1E-05)