Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Pancreas

Cell type

PANC-1

Tissue

Pancreas/Duct

Disease

Epithelioid Carcinoma

Sample

source_name

PANC-1

biomaterial_provider

ATCC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.

protocol description

a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

controlid

SL523,SL117

labexpid

SL523,SL117

labversion

SL523,SL117

replicate

1,2

cell lineage

endoderm

cell sex

M

antibody

RevXlinkChromatin

treatment

None

treatment description

No special treatment or protocol applies

protocol

PCR2x

protocol description

2-cycles of PCR (Myers)

controlid

SL117

labexpid

SL117

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803394: HudsonAlpha_ChipSeq_PANC-1_RevXlinkChromatin_PCR2x

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

126146676

Reads aligned (%)

42.9

Duplicates removed (%)

40.0

Number of peaks

3792 (qval < 1E-05)

hg19

Number of total reads

126146676

Reads aligned (%)

42.4

Duplicates removed (%)

41.1

Number of peaks

2748 (qval < 1E-05)