Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOSL1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the N-terminus of FOSL1 of human origin. Antibody Target: FOSL1
antibody targetdescription
The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-183
controlid
SL1398
labexpid
SL2692,SL4211
replicate
1,2
softwareversion
MACS
antibody
FOSL1_(SC-183)
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the N-terminus of FOSL1 of human origin.
antibody targetdescription
The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-183
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.2
protocol description
2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid
SL1398
labexpid
SL2692
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803382: HudsonAlpha_ChipSeq_H1-hESC_FOSL1_(SC-183)_v041610.2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
38635197
Reads aligned (%)
70.1
Duplicates removed (%)
23.7
Number of peaks
1521 (qval < 1E-05)

hg38

Number of total reads
38635197
Reads aligned (%)
71.7
Duplicates removed (%)
22.4
Number of peaks
1565 (qval < 1E-05)

Base call quality data from DBCLS SRA