Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MEF2A

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of MEF-2 of human origin. Antibody Target: MEF2A
antibody targetdescription
The protein encoded by this gene is a DNA-binding transcription factor that activates many muscme-specific, growth factor-induced, and stress-induced genes.
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-313
controlid
SL2455
labexpid
SL1794,SL3925
replicate
1,2
softwareversion
MACS
antibody
MEF2A
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of MEF-2 of human origin.
antibody targetdescription
The protein encoded by this gene is a DNA-binding transcription factor that activates many muscme-specific, growth factor-induced, and stress-induced genes.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-313
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL2455
labexpid
SL1794
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803379: HudsonAlpha_ChipSeq_K562_MEF2A_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
61816077
Reads aligned (%)
68.8
Duplicates removed (%)
22.6
Number of peaks
6536 (qval < 1E-05)

hg38

Number of total reads
61816077
Reads aligned (%)
69.7
Duplicates removed (%)
22.0
Number of peaks
6432 (qval < 1E-05)

Base call quality data from DBCLS SRA