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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: REST
wikigenes
PDBj
CellType: PFSK-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX100414
GSM803369: HudsonAlpha ChipSeq PFSK-1 NRSF PCR2x
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
REST
Cell type
Cell type Class
Neural
Cell type
PFSK-1
Primary Tissue
Brain
Tissue Diagnosis
Medulloblastoma
Attributes by original data submitter
Sample
source_name
PFSK-1
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
neuroectodermal cell line derived from a cerebral brain tumor, (PMID: 1316433)
antibody antibodydescription
Mouse monoclonal. Antibody Target: NRSF
antibody targetdescription
Neuron-restrictive silencer transcription factor
antibody vendorname
Dr. David Anderson at Caltech
antibody vendorid
(Made by Protein Expression Center: pec@caltech.edu)
protocol description
a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)
controlid
SL150,SL412
labexpid
SL411,SL149
replicate
1,2
softwareversion
MACS
antibody targetdescription
Neuron-restrictive silencer transcription factor
antibody vendorname
David Anderson, Caltech
antibody vendorid
(Made by Protein Expression Center: pec@caltech.edu)
treatment
None
treatment description
No special treatment or protocol applies
protocol
PCR2x
protocol description
2-cycles of PCR (Myers)
controlid
SL150
labexpid
SL149
replicate
1
replicate description
tier 1
Sequenced DNA Library
library_name
GSM803369: HudsonAlpha_ChipSeq_PFSK-1_NRSF_PCR2x
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
66387093
Reads aligned (%)
40.9
Duplicates removed (%)
12.0
Number of peaks
22852 (qval < 1E-05)
hg38
Number of total reads
66387093
Reads aligned (%)
41.3
Duplicates removed (%)
11.6
Number of peaks
22830 (qval < 1E-05)
Base call quality data from
DBCLS SRA