Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

protocol description

a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

controlid

SL217,SL218

labexpid

SL217,SL218

replicate

1,2

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

antibody

RevXlinkChromatin

treatment

None

treatment description

No special treatment or protocol applies

protocol

PCR2x

protocol description

2-cycles of PCR (Myers)

controlid

SL217

labexpid

SL217

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803346: HudsonAlpha_ChipSeq_GM12878_RevXlinkChromatin_PCR2x

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

62690795

Reads aligned (%)

93.2

Duplicates removed (%)

5.6

Number of peaks

6109 (qval < 1E-05)

hg19

Number of total reads

62690795

Reads aligned (%)

90.3

Duplicates removed (%)

4.4

Number of peaks

6046 (qval < 1E-05)