Antigen

Antigen Class

TFs and others

Antigen

NR3C1

Cell type

Cell type Class

Uterus

Cell type

ECC-1

Primary Tissue

Uterus

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

ECC-1

biomaterial_provider

ATCC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes

cell lineage

endoderm

antibody antibodydescription

Rabbit Polyclonal. Antibody Target: GR

antibody targetdescription

Glucocorticoid Receptor

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-1003

treatment description

1 h with 100 nM Dexamethasone (Myers)

controlid

SL1087,SL1035

labexpid

SL1012,SL1088

replicate

1,2

softwareversion

MACS

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-1004

treatment

DEX_100nM

treatment description

1 h with 100 nM DEX (Myers)

protocol

v041610.2

protocol description

2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

controlid

SL1035

labexpid

SL1012

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803340: HudsonAlpha_ChipSeq_ECC-1_GR_DEX_100nM_v041610.2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

58054349

Reads aligned (%)

58.8

Duplicates removed (%)

15.2

Number of peaks

16630 (qval < 1E-05)

hg19

Number of total reads

58054349

Reads aligned (%)

58.4

Duplicates removed (%)

16.5

Number of peaks

16647 (qval < 1E-05)