SRX10035158
GSM5066580: KYSE140 DMSO2hrs BRD4 A; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Digestive tract
Cell type
KYSE-140
Primary Tissue
Esophagus
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

source_name
KYSE140_DMSO2hrs_BRD4
cell line
KYSE140
cell type
Esophageal squamous cancer cell line
treatment
DMSO 2hrs
chip antibody
BRD4 (Bethyl, A301-985A100))

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation using antibodies to enrich DNA fragments NEBNext DNA Ultra II library prep kit (E7645S)

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14975262
Reads aligned (%)
98.7
Duplicates removed (%)
20.3
Number of peaks
22778 (qval < 1E-05)

hg19

Number of total reads
14975262
Reads aligned (%)
98.3
Duplicates removed (%)
20.4
Number of peaks
22589 (qval < 1E-05)

Base call quality data from DBCLS SRA