Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver tissue
strain
C57BL/6
tissue
Liver
time point
CT18
chip antibody
H3K9me3

Sequenced DNA Library

library_name
GSM577708: H3K9me3_CT18_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
7827127
Reads aligned (%)
21.4
Duplicates removed (%)
2.7
Number of peaks
66 (qval < 1E-05)

mm9

Number of total reads
7827127
Reads aligned (%)
21.4
Duplicates removed (%)
3.0
Number of peaks
62 (qval < 1E-05)

Base call quality data from DBCLS SRA