SRX10031706
GSM5066246: Spt3 rep 1; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Spt3

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
Ovary
chip antibody
Spt3
genotype
wild type

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
38372925
Reads aligned (%)
93.7
Duplicates removed (%)
20.1
Number of peaks
3182 (qval < 1E-05)

dm3

Number of total reads
38372925
Reads aligned (%)
94.1
Duplicates removed (%)
15.5
Number of peaks
6347 (qval < 1E-05)

Base call quality data from DBCLS SRA