Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver
time
ZT22
tissue
liver
strain
C57BL/6
fragmentation methods
Mnase Digestion

Sequenced DNA Library

library_name
GSM647039: Liver input at ZT22 Mnase digestion
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
23443678
Reads aligned (%)
93.2
Duplicates removed (%)
20.6
Number of peaks
274 (qval < 1E-05)

mm9

Number of total reads
23443678
Reads aligned (%)
93.1
Duplicates removed (%)
20.7
Number of peaks
299 (qval < 1E-05)

Base call quality data from DBCLS SRA