Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver
time
ZT22
tissue
liver
strain
C57BL/6
fragmentation methods
Sonication
chip-seq antibody
Pol II
chip-seq antibody manufacturer
santa cruz

Sequenced DNA Library

library_name
GSM647032: Pol II ChIP at ZT22
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
31420835
Reads aligned (%)
91.0
Duplicates removed (%)
26.2
Number of peaks
17887 (qval < 1E-05)

mm9

Number of total reads
31420835
Reads aligned (%)
90.9
Duplicates removed (%)
26.3
Number of peaks
17923 (qval < 1E-05)

Base call quality data from DBCLS SRA