Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nr1d1

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver
time
ZT22
tissue
liver
strain
C57BL/6
fragmentation methods
Sonication
chip-seq antibody
Rev-erba
chip-seq antibody manufacturer
cell signaling

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
20057672
Reads aligned (%)
86.5
Duplicates removed (%)
34.8
Number of peaks
502 (qval < 1E-05)

mm9

Number of total reads
20057672
Reads aligned (%)
86.3
Duplicates removed (%)
34.9
Number of peaks
568 (qval < 1E-05)

Base call quality data from DBCLS SRA