SRX100275
GSM801066: Input E2 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
H3396
NA
NA

Attributes by original data submitter

Sample

source_name
H3396 cells
cell line
H3396 cells
treatment
estrogen
chip antibody
none

Sequenced DNA Library

library_name
GSM801066: Input E2 rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10244932
Reads aligned (%)
98.3
Duplicates removed (%)
27.7
Number of peaks
113 (qval < 1E-05)

hg19

Number of total reads
10244932
Reads aligned (%)
97.8
Duplicates removed (%)
30.2
Number of peaks
124 (qval < 1E-05)

Base call quality data from DBCLS SRA