Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EZH2

Cell type

Cell type Class
Epidermis
Cell type
A-375
Primary Tissue
Skin
Tissue Diagnosis
Melanoma

Attributes by original data submitter

Sample

source_name
A375 cells
cell line
A375
treatment
untreated
chip antibody
EZH2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Approximately 5X107 cells were used for each ChIP-seq assay. The chromatin DNA precipitated by polyclonal antibodies against USP7, EZH2, H3K27me3 or H2BK120ub1. The DNA samples were purified with the Qiagen PCR purification kit before in-depth whole genome DNA sequencing was performed by CapitalBio Corporation (Beijing, China). The raw sequencing image data were examined by the Illumina analysis pipeline, aligned to the unmasked human reference genome (hg19) using Bowtie2, and further analyzed by MACS (Model-based Analysis for ChIP-seq).

Sequencing Platform

instrument_model
HiSeq X Ten

hg38

Number of total reads
70251570
Reads aligned (%)
57.4
Duplicates removed (%)
29.0
Number of peaks
976 (qval < 1E-05)

hg19

Number of total reads
70251570
Reads aligned (%)
56.8
Duplicates removed (%)
29.6
Number of peaks
508 (qval < 1E-05)

Base call quality data from DBCLS SRA