SRX099888
GSM808777: H54 INPUT

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
D54
NA
NA

Attributes by original data submitter

Sample

source_name
glioblastoma
cell type
glioblastoma
cell line
H54
antibody
INPUT

Sequenced DNA Library

library_name
GSM808777: H54_INPUT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
52963405
Reads aligned (%)
99.2
Duplicates removed (%)
8.8
Number of peaks
1824 (qval < 1E-05)

hg19

Number of total reads
52963405
Reads aligned (%)
98.6
Duplicates removed (%)
10.1
Number of peaks
1676 (qval < 1E-05)

Base call quality data from DBCLS SRA