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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: FB8470
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX099870
GSM808759: FB8470 CTCF REP1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Others
Cell type
FB8470
NA
NA
Attributes by original data submitter
Sample
source_name
Normal child fibroblasts
cell type
Normal child fibroblasts
cell line
FB8470
antibody
CTCF
Sequenced DNA Library
library_name
GSM808759: FB8470_CTCF_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
45989900
Reads aligned (%)
25.5
Duplicates removed (%)
40.6
Number of peaks
33759 (qval < 1E-05)
hg38
Number of total reads
45989900
Reads aligned (%)
25.7
Duplicates removed (%)
40.2
Number of peaks
33933 (qval < 1E-05)
Base call quality data from
DBCLS SRA