SRX099870
GSM808759: FB8470 CTCF REP1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Others
Cell type
FB8470
NA
NA

Attributes by original data submitter

Sample

source_name
Normal child fibroblasts
cell type
Normal child fibroblasts
cell line
FB8470
antibody
CTCF

Sequenced DNA Library

library_name
GSM808759: FB8470_CTCF_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45989900
Reads aligned (%)
43.0
Duplicates removed (%)
40.2
Number of peaks
33933 (qval < 1E-05)

hg19

Number of total reads
45989900
Reads aligned (%)
42.9
Duplicates removed (%)
40.6
Number of peaks
33759 (qval < 1E-05)

Base call quality data from DBCLS SRA