SRX099625
GSM801985: Mm NP K36me3 b

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neuronal progenitor (NP) cells derived from mouse embryonic stem cells
cell type
Neuronal progenitor (NP) cells derived from mouse embryonic stem cells
strain
129Sv-C57Bl/6
chip antibody
H3K36me3
chip antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM801985: Mm NP K36me3 b
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
40794182
Reads aligned (%)
78.0
Duplicates removed (%)
40.9
Number of peaks
419 (qval < 1E-05)

mm9

Number of total reads
40794182
Reads aligned (%)
77.9
Duplicates removed (%)
41.0
Number of peaks
468 (qval < 1E-05)

Base call quality data from DBCLS SRA