SRX099403
GSM802402: e1a H3K9ac ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
lung fibroblasts
cell line
IMR90 human primary lung embryo fibroblasts
cell type
contact-inhibited IMR90
infection
dl1500-infected
passages
6 to 10
chip target
H3K9ac
chip antibody
Upstate H3K9ac (07-352)

Sequenced DNA Library

library_name
GSM802402: e1a H3K9ac_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37363949
Reads aligned (%)
64.2
Duplicates removed (%)
5.3
Number of peaks
4755 (qval < 1E-05)

hg19

Number of total reads
37363949
Reads aligned (%)
63.9
Duplicates removed (%)
5.9
Number of peaks
4658 (qval < 1E-05)

Base call quality data from DBCLS SRA