SRX099402
GSM802401: Mock H3K9ac ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
lung fibroblasts
cell line
IMR90 human primary lung embryo fibroblasts
cell type
contact-inhibited IMR90
infection
mock-infected
passages
6 to 10
chip target
H3K9ac
chip antibody
Upstate H3K9ac

Sequenced DNA Library

library_name
GSM802401: Mock H3K9ac_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23284853
Reads aligned (%)
82.5
Duplicates removed (%)
1.9
Number of peaks
16243 (qval < 1E-05)

hg19

Number of total reads
23284853
Reads aligned (%)
82.2
Duplicates removed (%)
2.4
Number of peaks
16183 (qval < 1E-05)

Base call quality data from DBCLS SRA