SRX099395
GSM803123: H3K27me3 Ikaros knockout chromatin preleukemic stage2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse Ik knockout DP thymocytes
genetic background
C57BL/6 x129S4/SvJae
genotype
Ikaros knockout
cell type
DP thymocytes
developmental stage
pre-leukemic stage II
chip antibody
H3K27me3
chip antibody manufacturer
Millipore
chip antibody catalog number
07-449

Sequenced DNA Library

library_name
GSM803123: H3K27me3 Ikaros knockout chromatin preleukemic stage2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25420002
Reads aligned (%)
88.0
Duplicates removed (%)
37.1
Number of peaks
305 (qval < 1E-05)

mm9

Number of total reads
25420002
Reads aligned (%)
87.9
Duplicates removed (%)
37.3
Number of peaks
329 (qval < 1E-05)

Base call quality data from DBCLS SRA