SRX099386
GSM803114: H3K9ac2 wildtype

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse wt DP thymocytes
genetic background
C57BL/6
genotype
wt
cell type
DP thymocytes
chip antibody
H3K9ac2
chip antibody manufacturer
Millipore
chip antibody catalog number
06-599

Sequenced DNA Library

library_name
GSM803114: H3K9ac2 wildtype
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12662225
Reads aligned (%)
81.6
Duplicates removed (%)
10.4
Number of peaks
9233 (qval < 1E-05)

mm9

Number of total reads
12662225
Reads aligned (%)
81.5
Duplicates removed (%)
10.7
Number of peaks
9222 (qval < 1E-05)

Base call quality data from DBCLS SRA