Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Kdm4d

Cell type

Cell type Class
Blood
Cell type
Dendritic Cells
MeSH Description
ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Attributes by original data submitter

Sample

source_name
JmjD2d_stim_DC
cell type
dendritic cells
chip antibody
anti-JmjD2d (clone 1-7)

Sequenced DNA Library

library_name
GSM801528: JmjD2d_stim_DC
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
39705140
Reads aligned (%)
89.8
Duplicates removed (%)
25.5
Number of peaks
593 (qval < 1E-05)

mm9

Number of total reads
39705140
Reads aligned (%)
89.6
Duplicates removed (%)
25.5
Number of peaks
722 (qval < 1E-05)

Base call quality data from DBCLS SRA