SRX099222
GSM802747: RNA Pol II siRNA Gdown1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
RNA Pol II siRNA Gdown1
cell line
HeLa
chip antibody
N-20 antibody (Santa Cruz, sc-899)
treatment
Gdown1 siRNA treatment

Sequenced DNA Library

library_name
GSM802747: RNA Pol II siRNA Gdown1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25401032
Reads aligned (%)
49.5
Duplicates removed (%)
7.8
Number of peaks
8784 (qval < 1E-05)

hg19

Number of total reads
25401032
Reads aligned (%)
49.1
Duplicates removed (%)
8.6
Number of peaks
8902 (qval < 1E-05)

Base call quality data from DBCLS SRA