SRX099221
GSM802746: RNA Pol II siRNA Control

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
RNA Pol II siRNA Control
cell line
HeLa
chip antibody
N-20 antibody (Santa Cruz, sc-899)
treatment
none

Sequenced DNA Library

library_name
GSM802746: RNA Pol II siRNA Control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26282174
Reads aligned (%)
66.2
Duplicates removed (%)
6.2
Number of peaks
12408 (qval < 1E-05)

hg19

Number of total reads
26282174
Reads aligned (%)
65.7
Duplicates removed (%)
7.0
Number of peaks
12555 (qval < 1E-05)

Base call quality data from DBCLS SRA