SRX097581
GSM768311: FOXP1 ChIP-Seq 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXP1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
H9 hESCs
chip antibody
FOXP1
chip antibody vendor
Abcam
cell type
H9 hESCs

Sequenced DNA Library

library_name
GSM768311: FOXP1_ChIP-Seq_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
106886236
Reads aligned (%)
30.0
Duplicates removed (%)
67.2
Number of peaks
12874 (qval < 1E-05)

hg38

Number of total reads
106886236
Reads aligned (%)
31.8
Duplicates removed (%)
65.4
Number of peaks
13181 (qval < 1E-05)

Base call quality data from DBCLS SRA