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For hg19
BigWig
Peak-call (q < 1E-05)
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For hg38
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: FOXP1
wikigenes
PDBj
CellType: hESC H9
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX097581
GSM768311: FOXP1 ChIP-Seq 2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
FOXP1
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA
Attributes by original data submitter
Sample
source_name
H9 hESCs
chip antibody
FOXP1
chip antibody vendor
Abcam
cell type
H9 hESCs
Sequenced DNA Library
library_name
GSM768311: FOXP1_ChIP-Seq_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
106886236
Reads aligned (%)
30.0
Duplicates removed (%)
67.2
Number of peaks
12874 (qval < 1E-05)
hg38
Number of total reads
106886236
Reads aligned (%)
31.8
Duplicates removed (%)
65.4
Number of peaks
13181 (qval < 1E-05)
Base call quality data from
DBCLS SRA